STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcpEDUF5059 domain / halocyanin domain protein. (821 aa)    
Predicted Functional Partners:
aceB1
Malate synthase; Involved in the glyoxylate cycle which synthesizes precursors for carbohydrates from C2 compounds such as acetate. Catalyzes the Claisen condensation between acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form the malyl-CoA intermediate that is subsequently hydrolyzed to produce malate and CoA.
  
     0.649
HVO_1247
NUDIX family hydrolase.
  
     0.638
hcpH
Halocyanin.
  
   
 0.633
narC2
Homolog to respiratory nitrate reductase b-type cytochrome subunit.
 
   
 0.598
narB2
Rieske-type [2Fe-2S] iron-sulfur protein.
  
  
 0.591
HVO_1704
Homolog to arabinopyranose mutase.
  
     0.583
HVO_2576
DnaJ N-terminal domain protein.
  
     0.583
HVO_1464
ABC-type transport system periplasmic substrate-binding protein.
  
     0.579
prrC
SCO1/SenC/PrrC family protein.
 
     0.578
HVO_2080
Uncharacterized protein.
  
     0.578
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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