STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuA1ABC-type transport system periplasmic substrate-binding protein (probable substrate zinc). (368 aa)    
Predicted Functional Partners:
znuC1
ABC-type transport system ATP-binding protein (probable substrate zinc).
 
 
 0.999
znuB1
ABC-type transport system permease protein (probable substrate zinc).
 
 
 0.999
HVO_2979
CobW domain protein.
  
  
 0.824
rps14
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.732
HVO_0538
SirR/DtxR family transcription regulator.
  
  
 0.644
mntH1
NRAMP family transport protein MntH (probable substrate manganese).
  
  
 0.629
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
     
 0.571
copA
P-type transport ATPase (probable substrate copper/metal cation).
     
 0.559
birA
HTH domain protein / biotin--[acetyl-CoA-carboxylase] ligase.
 
   
 0.557
dpsA1
Ferritin; Belongs to the Dps family.
 
   
 0.550
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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