STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HVO_2650FAD-dependent oxidoreductase (homolog to geranylgeranyl reductase). (461 aa)    
Predicted Functional Partners:
HVO_2732
FixC family protein.
 
 
 0.819
HVO_1396
FAD-dependent oxidoreductase (homolog to geranylgeranyl reductase).
  
     0.678
etfB2
Electron transfer flavoprotein beta subunit.
 
 
 0.676
HVO_2651
Uncharacterized protein.
       0.634
etfA2
Electron transfer flavoprotein alpha subunit.
 
 
 0.602
etfB1
Electron transfer flavoprotein beta subunit.
  
 
 0.598
HVO_0396
FAD-dependent oxidoreductase (homolog to geranylgeranyl reductase).
  
     0.553
etfA1
Electron transfer flavoprotein alpha subunit.
  
 
 0.530
fdfT
Squalene synthase.
 
  
 0.524
ubiA2
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.470
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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