STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0043Electron transfer flavoprotein alpha subunit; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012. (330 aa)    
Predicted Functional Partners:
trd_0042
Electron transfer flavoprotein beta-subunit; Identified by match to protein family HMM PF01012.
 0.999
trd_0149
Electron transfer flavoprotein subunit beta; Identified by match to protein family HMM PF01012.
 
 0.984
trd_0039
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
 0.969
trd_0044
Putative FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; match to protein family HMM PF07992.
 
 
 0.950
trd_0116
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
 0.927
trd_1340
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
 0.926
trd_0041
3-hydroxybutyryl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.775
trd_1165
Glycolate oxidase subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.
  
 
 0.723
trd_0040
Conserved hypothetical protein; Identified by match to protein family HMM PF00132.
       0.616
trd_0261
Glycolate oxidase subunit glcE; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
 
 
 0.584
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
Server load: low (22%) [HD]