STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0078Putative membrane protein. (287 aa)    
Predicted Functional Partners:
trd_1100
Putative FesM; Identified by match to protein family HMM PF00037.
 
     0.907
trd_0709
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.760
trd_0707
CoxC.
 
  
 0.738
trd_0708
Quinol oxidase polypeptide I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
  
 0.712
trd_1008
Copper resistance protein CopC; Identified by match to protein family HMM PF04234; match to protein family HMM PF05425.
 
   
 0.693
trd_0080
Putative integral membrane protein.
       0.524
trd_0558
Cytochrome c oxidase subunit 1; Identified by match to protein family HMM PF00115.
 
  
 0.486
trd_0557
Cytochrome c oxidase (bo3-type) subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF00127.
 
  
 0.462
trd_1315
Cytochrome C and Quinol oxidase polypeptide I superfamily; Identified by match to protein family HMM PF00115.
 
  
 0.460
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.