STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0252Transcriptional regulator, IclR family, C-terminal domain protein; Identified by match to protein family HMM PF01614; match to protein family HMM PF09339. (275 aa)    
Predicted Functional Partners:
trd_1946
Senescence marker protein-30 (SMP-30); Identified by match to protein family HMM PF08450.
      0.905
trd_0251
Putative ABC transporter solute-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.
  
    0.779
trd_0247
Protein of unknown function (DUF718) superfamily; Identified by match to protein family HMM PF05336.
  
  
 0.747
trd_0250
Transporter; Identified by match to protein family HMM PF00528.
       0.709
trd_0249
Inner membrane ABC transporter permease protein ycjP; Identified by match to protein family HMM PF00528.
       0.704
trd_0248
Putative dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.
  
    0.674
trd_0245
Identified by match to protein family HMM PF04909.
  
  
 0.670
trd_0244
Conserved hypothetical protein.
       0.641
trd_0246
D-threo-aldose 1-dehydrogenase; Identified by match to protein family HMM PF00248.
       0.641
trd_0129
GntR-family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.533
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.