trd_0426 protein (Thermomicrobium roseum) - STRING interaction network

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Score

trd_0426

Hypothetical protein; Identified by glimmer; putative. (58 aa)

Predicted Functional Partners:

trd_0425

0.773

uvrC

0.773

trd_0428

0.773

trd_0429

0.545

trd_0430

0.545

trd_0431

0.545

trd_0432

0.518

rph

0.518

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rph	trd_0425	trd_0433	trd_0425	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Conserved hypothetical protein.	0.518
rph	trd_0426	trd_0433	trd_0426	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Hypothetical protein; Identified by glimmer; putative.	0.518
rph	trd_0428	trd_0433	trd_0428	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.	0.622
rph	trd_0429	trd_0433	trd_0429	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Putative UDP-glucuronosyltransferase.	0.732
rph	trd_0430	trd_0433	trd_0430	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Putative membrane protein.	0.732
rph	trd_0431	trd_0433	trd_0431	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Hypothetical protein; Identified by glimmer; putative.	0.732
rph	trd_0432	trd_0433	trd_0432	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	ATPase, aaa family; Identified by match to protein family HMM PF00004; match to protein family HMM PF07728.	0.774
rph	uvrC	trd_0433	trd_0427	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.	0.518
trd_0425	rph	trd_0425	trd_0433	Conserved hypothetical protein.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.518
trd_0425	trd_0426	trd_0425	trd_0426	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.773
trd_0425	trd_0428	trd_0425	trd_0428	Conserved hypothetical protein.	Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.	0.773
trd_0425	trd_0429	trd_0425	trd_0429	Conserved hypothetical protein.	Putative UDP-glucuronosyltransferase.	0.545
trd_0425	trd_0430	trd_0425	trd_0430	Conserved hypothetical protein.	Putative membrane protein.	0.545
trd_0425	trd_0431	trd_0425	trd_0431	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.545
trd_0425	trd_0432	trd_0425	trd_0432	Conserved hypothetical protein.	ATPase, aaa family; Identified by match to protein family HMM PF00004; match to protein family HMM PF07728.	0.518
trd_0425	uvrC	trd_0425	trd_0427	Conserved hypothetical protein.	Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.	0.773
trd_0426	rph	trd_0426	trd_0433	Hypothetical protein; Identified by glimmer; putative.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.518
trd_0426	trd_0425	trd_0426	trd_0425	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein.	0.773
trd_0426	trd_0428	trd_0426	trd_0428	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.	0.773
trd_0426	trd_0429	trd_0426	trd_0429	Hypothetical protein; Identified by glimmer; putative.	Putative UDP-glucuronosyltransferase.	0.545