STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0464Putative cytochrome c subfamily; Identified by match to protein family HMM PF00034. (197 aa)    
Predicted Functional Partners:
trd_0466
Probable molybdopterin oxidoreductase, membrane subunit; Identified by match to protein family HMM PF03916.
 
 
 
 0.971
trd_0467
Putative membrane protein.
 
 
 
 0.964
trd_0469
Putative 4Fe-4S ferredoxin, iron-sulfur binding; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.963
trd_0468
Oxidoreductase, iron-sulfur cluster-binding subunit; Identified by match to protein family HMM PF00037.
 
 
 0.957
trd_0470
Chaperone protein HtpG.
 
 
 0.954
trd_0465
Conserved hypothetical protein.
 
     0.928
trd_0594
Cytochrome oxidase subunit II; Identified by match to protein family HMM PF00034.
 
 
 0.914
trd_0707
CoxC.
  
 
 0.905
trd_1315
Cytochrome C and Quinol oxidase polypeptide I superfamily; Identified by match to protein family HMM PF00115.
 
 
 0.782
trd_0557
Cytochrome c oxidase (bo3-type) subunit II; Identified by match to protein family HMM PF00116; match to protein family HMM PF00127.
  
 
 0.752
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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