trd_0475 protein (Thermomicrobium roseum) - STRING interaction network

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

trd_0475

Hypothetical protein; Identified by glimmer; putative. (475 aa)

Predicted Functional Partners:

trd_1658

0.768

trd_0474

0.766

trd_0182

0.747

trd_0607

0.744

trd_1038

0.741

trd_1051

0.736

trd_1665

0.729

trd_0005

0.725

trd_1257

0.694

trd_1271

0.622

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
trd_0005	trd_0182	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Conserved hypothetical protein.	0.816
trd_0005	trd_0475	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.725
trd_0005	trd_0607	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.557
trd_0005	trd_1038	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	O-Antigen Polymerase family; Identified by match to protein family HMM PF04932.	0.647
trd_0005	trd_1051	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.769
trd_0005	trd_1257	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Conserved hypothetical protein.	0.741
trd_0005	trd_1271	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Similar to A. fulgidus predicted coding region.	0.624
trd_0005	trd_1658	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative S-layer associated protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00188.	0.766
trd_0005	trd_1665	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.687
trd_0182	trd_0005	Conserved hypothetical protein.	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.816
trd_0182	trd_0475	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.747
trd_0182	trd_0607	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.766
trd_0182	trd_1038	Conserved hypothetical protein.	O-Antigen Polymerase family; Identified by match to protein family HMM PF04932.	0.757
trd_0182	trd_1051	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.770
trd_0182	trd_1257	Conserved hypothetical protein.	Conserved hypothetical protein.	0.786
trd_0182	trd_1271	Conserved hypothetical protein.	Similar to A. fulgidus predicted coding region.	0.732
trd_0182	trd_1658	Conserved hypothetical protein.	Putative S-layer associated protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00188.	0.781
trd_0182	trd_1665	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.770
trd_0474	trd_0475	Putative membrane protein.	Hypothetical protein; Identified by glimmer; putative.	0.766
trd_0475	trd_0005	Hypothetical protein; Identified by glimmer; putative.	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.725