STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0490Putative membrane protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374. (328 aa)    
Predicted Functional Partners:
uppP
Putative undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
  
 0.786
trd_0648
Amine oxidase, flavin-containing protein; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
 
    0.663
trd_0825
Putative membrane protein.
 
    0.656
trd_1271
Similar to A. fulgidus predicted coding region.
  
     0.655
trd_0826
Putative membrane protein.
 
    0.631
trd_1801
Putative membrane protein.
 
     0.524
trd_0928
Phycocyanin alpha phycocyanobilin lyase related protein; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.
  
     0.523
trd_1180
Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.
  
     0.436
trd_0845
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
  
 0.430
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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