trd_0535 protein (Thermomicrobium roseum) - STRING interaction network

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Score

trd_0535

DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764. (82 aa)

Predicted Functional Partners:

ureC

0.634

ureB

0.634

ureA

0.634

trd_0534

0.634

trd_0284

0.605

dnaJ-2

0.605

dnaJ

0.605

rpoB

0.601

rpoA

0.541

rpoC

0.531

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dnaJ	trd_0535	trd_1453	trd_0535	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	0.605
dnaJ-2	trd_0535	trd_0663	trd_0535	Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	0.605
rpoA	rpoB	trd_0957	trd_0991	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	trd_0957	trd_0990	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	trd_0535	trd_0957	trd_0535	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	0.541
rpoB	rpoA	trd_0991	trd_0957	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	trd_0991	trd_0990	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	trd_0535	trd_0991	trd_0535	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	0.601
rpoC	rpoA	trd_0990	trd_0957	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	rpoB	trd_0990	trd_0991	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	trd_0535	trd_0990	trd_0535	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	0.531
trd_0284	trd_0535	trd_0284	trd_0535	Curved DNA-binding protein; Identified by match to protein family HMM PF00226.	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	0.605
trd_0534	trd_0535	trd_0534	trd_0535	Hypothetical protein; Identified by glimmer; putative.	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	0.634
trd_0534	ureA	trd_0534	trd_0533	Hypothetical protein; Identified by glimmer; putative.	Urease, gamma subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.	0.773
trd_0534	ureB	trd_0534	trd_0532	Hypothetical protein; Identified by glimmer; putative.	Urease, beta subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192.	0.773
trd_0534	ureC	trd_0534	trd_0531	Hypothetical protein; Identified by glimmer; putative.	Urease alpha subunit; Identified by match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM PF07969.	0.773
trd_0535	dnaJ	trd_0535	trd_1453	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.605
trd_0535	dnaJ-2	trd_0535	trd_0663	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.605
trd_0535	rpoA	trd_0535	trd_0957	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.541
trd_0535	rpoB	trd_0535	trd_0991	DNA binding domain, excisionase family protein; Identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.601