trd_0550 protein (Thermomicrobium roseum) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

trd_0550

Hypothetical protein; Identified by glimmer; putative. (781 aa)

Predicted Functional Partners:

trd_1676

0.765

trd_0005

0.759

trd_1051

0.740

trd_1883

0.740

trd_1916

0.737

trd_1908

0.716

trd_1914

0.712

trd_0233

0.693

trd_1371

0.680

trd_1822

0.678

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
trd_0005	trd_0233	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.677
trd_0005	trd_0550	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.759
trd_0005	trd_1051	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.769
trd_0005	trd_1371	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Identified by match to protein family HMM PF03734.	0.762
trd_0005	trd_1676	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	0.672
trd_0005	trd_1822	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	N-acetylmuramoyl-L-alanine amidase domain protein; Identified by match to protein family HMM PF01510.	0.791
trd_0005	trd_1883	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative multidrug-efflux transporter; Identified by match to protein family HMM PF07690.	0.771
trd_0005	trd_1908	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative membrane protein.	0.623
trd_0005	trd_1914	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative oxidoreductase.	0.769
trd_0005	trd_1916	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.773
trd_0233	trd_0005	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.677
trd_0233	trd_0550	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Hypothetical protein; Identified by glimmer; putative.	0.693
trd_0233	trd_1051	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Hypothetical protein; Identified by glimmer; putative.	0.577
trd_0233	trd_1371	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Identified by match to protein family HMM PF03734.	0.691
trd_0233	trd_1883	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Putative multidrug-efflux transporter; Identified by match to protein family HMM PF07690.	0.646
trd_0233	trd_1914	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Putative oxidoreductase.	0.605
trd_0233	trd_1916	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Hypothetical protein; Identified by glimmer; putative.	0.732
trd_0550	trd_0005	Hypothetical protein; Identified by glimmer; putative.	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.759
trd_0550	trd_0233	Hypothetical protein; Identified by glimmer; putative.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.693
trd_0550	trd_1051	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.740