STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0599ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (268 aa)    
Predicted Functional Partners:
trd_0598
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.992
trd_0597
Putative pyrimidine precursor biosynthesis enzyme; Identified by match to protein family HMM PF09084.
 
  
 0.969
trd_0318
Putative ABC transport proteins, inner membrane component; Identified by match to protein family HMM PF00528.
  
 0.945
trd_1629
Oligopeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.888
trd_1954
Putative oligopeptide transport atp-binding abc transporter protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.850
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
    
0.721
trd_0902
Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.
 
  
 0.682
trd_0187
Putative ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.432
trd_1149
Probable nodulation ATP-binding ABC transporter protein; Identified by match to protein family HMM PF00005.
 
    
0.414
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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