ubiB protein (Thermomicrobium roseum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

ubiB

2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109. (556 aa)

Predicted Functional Partners:

htpX

0.567

trd_0762

0.544

recJ

0.519

trd_1286

0.429

trd_1849

0.429

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
htpX	trd_0762	trd_0760	trd_0762	Protease htpx; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family.	Conserved hypothetical protein.	0.881
htpX	ubiB	trd_0760	trd_0757	Protease htpx; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family.	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	0.567
recJ	ubiB	trd_1194	trd_0757	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	0.519
trd_0762	htpX	trd_0762	trd_0760	Conserved hypothetical protein.	Protease htpx; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family.	0.881
trd_0762	ubiB	trd_0762	trd_0757	Conserved hypothetical protein.	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	0.544
trd_1286	ubiB	trd_1286	trd_0757	Conserved hypothetical protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	0.429
trd_1849	ubiB	trd_1849	trd_0757	Glycosyl transferase, family 2:Glycosyl transferase, group 1; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	0.429
ubiB	htpX	trd_0757	trd_0760	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	Protease htpx; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family.	0.567
ubiB	recJ	trd_0757	trd_1194	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	0.519
ubiB	trd_0762	trd_0757	trd_0762	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	Conserved hypothetical protein.	0.544
ubiB	trd_1286	trd_0757	trd_1286	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	Conserved hypothetical protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.	0.429
ubiB	trd_1849	trd_0757	trd_1849	2-polyprenylphenol 6-hydroxylase; Identified by match to protein family HMM PF03109.	Glycosyl transferase, family 2:Glycosyl transferase, group 1; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.429