STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0796Glyoxylate reductase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (328 aa)    
Predicted Functional Partners:
trd_1031
Putative hydroxypyruvate reductase; Identified by match to protein family HMM PF05161.
 
 0.959
trd_0260
Glycolate oxidase subunit glcD; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
   
 0.922
trd_0261
Glycolate oxidase subunit glcE; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
   
 0.922
aceB
Malate synthase A; Identified by match to protein family HMM PF01274; match to protein family HMM TIGR01344; Belongs to the malate synthase family.
   
 
 0.920
trd_0455
malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.
    
 0.916
trd_0496
Isocitrate lyase; Identified by match to protein family HMM PF00463.
     
 0.912
trd_0197
Putative aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM PF01791; match to protein family HMM PF02581; match to protein family HMM TIGR01182.
    
  0.910
trd_0262
4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function, cysteine-rich region; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
    
 0.906
trd_0797
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
     
 0.776
tal
Transaldolase and glucose-6-phosphate isomerase bifunctional protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.718
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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