STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0843AprM; Identified by match to protein family HMM PF00534. (378 aa)    
Predicted Functional Partners:
trd_0842
Putative membrane protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374.
 
    0.835
trd_0845
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
  
 0.801
trd_0841
O-Antigen Polymerase family; Identified by match to protein family HMM PF04932.
 
    0.797
trd_0839
O-Antigen Polymerase family; Identified by match to protein family HMM PF04932.
 
    0.774
trd_0840
UDP-glucuronate decarboxylase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
  
 0.764
trd_0087
Putative glycosyl transferase; Identified by match to protein family HMM PF00534.
  
     0.710
trd_0838
Hypothetical protein; Identified by glimmer; putative.
       0.700
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.572
trd_0452
Glycosyl transferases group 1; Identified by match to protein family HMM PF00534.
  
     0.548
trd_0836
Cell division membrane protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
  
    0.511
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.