STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0870G5 domain family. (769 aa)    
Predicted Functional Partners:
trd_0869
Conserved hypothetical protein.
 
     0.803
trd_0866
Conserved hypothetical protein.
       0.737
trd_0868
Conserved hypothetical protein.
       0.737
trd_1763
Hypothetical conserved protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00188.
  
     0.671
trd_0871
Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
       0.525
trd_0544
Probable transcription regulator; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.
 
     0.523
trd_1822
N-acetylmuramoyl-L-alanine amidase domain protein; Identified by match to protein family HMM PF01510.
  
     0.522
trd_1916
Hypothetical protein; Identified by glimmer; putative.
  
     0.426
trd_1542
Putative membrane protein.
  
     0.405
trd_0475
Hypothetical protein; Identified by glimmer; putative.
  
     0.404
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.