trd_0902 protein (Thermomicrobium roseum) - STRING interaction network

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Score

trd_0902

Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084. (396 aa)

Predicted Functional Partners:

trd_0318

0.895

trd_0317

0.828

trd_0005

0.711

trd_0598

0.682

trd_0599

0.682

trd_1914

0.634

trd_0550

0.624

trd_1013

0.623

trd_0328

0.607

trd_1916

0.590

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
trd_0005	trd_0328	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	0.743
trd_0005	trd_0550	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.759
trd_0005	trd_0902	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	0.711
trd_0005	trd_1013	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative membrane fimbriae assembly protein; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177.	0.759
trd_0005	trd_1914	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative oxidoreductase.	0.769
trd_0005	trd_1916	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.773
trd_0317	trd_0318	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative ABC transport proteins, inner membrane component; Identified by match to protein family HMM PF00528.	0.988
trd_0317	trd_0598	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.952
trd_0317	trd_0902	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	0.828
trd_0318	trd_0317	Putative ABC transport proteins, inner membrane component; Identified by match to protein family HMM PF00528.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.988
trd_0318	trd_0599	Putative ABC transport proteins, inner membrane component; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.945
trd_0318	trd_0902	Putative ABC transport proteins, inner membrane component; Identified by match to protein family HMM PF00528.	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	0.895
trd_0328	trd_0005	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.743
trd_0328	trd_0550	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	Hypothetical protein; Identified by glimmer; putative.	0.662
trd_0328	trd_0902	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	0.607
trd_0328	trd_1013	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	Putative membrane fimbriae assembly protein; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177.	0.608
trd_0328	trd_1914	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	Putative oxidoreductase.	0.640
trd_0328	trd_1916	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	Hypothetical protein; Identified by glimmer; putative.	0.750
trd_0550	trd_0005	Hypothetical protein; Identified by glimmer; putative.	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.759
trd_0550	trd_0328	Hypothetical protein; Identified by glimmer; putative.	Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF01978; match to protein family HMM PF08279.	0.662