trd_0905 protein (Thermomicrobium roseum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

trd_0905

Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737. (227 aa)

Predicted Functional Partners:

trd_0904

0.995

trd_0559

0.900

ilvN

0.900

ilvB

0.900

trd_0821

0.900

trd_0894

0.900

trd_0903

0.880

trd_0906

0.832

trd_0311

0.772

trd_0902

0.426

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ilvB	ilvN	trd_0627	trd_0626	Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	0.999
ilvB	trd_0905	trd_0627	trd_0905	Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.	Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737.	0.900
ilvN	ilvB	trd_0626	trd_0627	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.	0.999
ilvN	trd_0559	trd_0626	trd_0559	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	Probable acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.930
ilvN	trd_0821	trd_0626	trd_0821	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	Putative acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.930
ilvN	trd_0894	trd_0626	trd_0894	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	Acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.934
ilvN	trd_0905	trd_0626	trd_0905	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737.	0.900
trd_0311	trd_0905	trd_0311	trd_0905	Probable transferase protein.	Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737.	0.772
trd_0559	ilvN	trd_0559	trd_0626	Probable acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	0.930
trd_0559	trd_0905	trd_0559	trd_0905	Probable acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737.	0.900
trd_0821	ilvN	trd_0821	trd_0626	Putative acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	0.930
trd_0821	trd_0905	trd_0821	trd_0905	Putative acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737.	0.900
trd_0894	ilvN	trd_0894	trd_0626	Acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	0.934
trd_0894	trd_0905	trd_0894	trd_0905	Acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737.	0.900
trd_0902	trd_0903	trd_0902	trd_0903	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	Conserved hypothetical protein.	0.456
trd_0902	trd_0904	trd_0902	trd_0904	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	Identified by match to protein family HMM PF02585.	0.456
trd_0902	trd_0905	trd_0902	trd_0905	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	Demethylmenaquinone methyltransferase; Identified by match to protein family HMM PF03737.	0.426
trd_0902	trd_0906	trd_0902	trd_0906	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	Catechol 2,3-dioxygenase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03211.	0.405
trd_0903	trd_0902	trd_0903	trd_0902	Conserved hypothetical protein.	Putative ABC transporter substrate-binding protein; Identified by match to protein family HMM PF09084.	0.456
trd_0903	trd_0904	trd_0903	trd_0904	Conserved hypothetical protein.	Identified by match to protein family HMM PF02585.	0.933