Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trd_1007Uncharacterized ACR; COG1430; identified by match to protein family HMM PF02643. (137 aa)    
Predicted Functional Partners:
trd_1009
Type II secretion system protein; Identified by match to protein family HMM PF00482.
 
     0.803
trd_1010
Bacterial type II secretion system protein F domain; Identified by match to protein family HMM PF00482.
 
     0.801
trd_1004
Conserved hypothetical protein.
       0.786
trd_1011
CpaF; Identified by match to protein family HMM PF00437.
 
     0.783
trd_1012
Putative two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01656.
 
     0.739
trd_1008
Copper resistance protein CopC; Identified by match to protein family HMM PF04234; match to protein family HMM PF05425.
       0.560
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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