Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fabD | trd_1187 | trd_1622 | trd_1187 | Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128. | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.465 |
| nnrE | trd_1131 | trd_0815 | trd_1131 | Protein of unknown function:YjeF-related protein, N-terminal; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate deh [...] | Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.982 |
| nnrE | trd_1187 | trd_0815 | trd_1187 | Protein of unknown function:YjeF-related protein, N-terminal; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate deh [...] | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.997 |
| rph | trd_1131 | trd_0433 | trd_1131 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.721 |
| rph | trd_1187 | trd_0433 | trd_1187 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.921 |
| tilS | trd_1187 | trd_0295 | trd_1187 | Putative bifunctional protein tilS/hprT; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.455 |
| trd_1131 | nnrE | trd_1131 | trd_0815 | Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | Protein of unknown function:YjeF-related protein, N-terminal; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate deh [...] | 0.982 |
| trd_1131 | rph | trd_1131 | trd_0433 | Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.721 |
| trd_1131 | trd_1187 | trd_1131 | trd_1187 | Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.965 |
| trd_1185 | trd_1187 | trd_1185 | trd_1187 | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.540 |
| trd_1187 | fabD | trd_1187 | trd_1622 | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128. | 0.465 |
| trd_1187 | nnrE | trd_1187 | trd_0815 | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Protein of unknown function:YjeF-related protein, N-terminal; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate deh [...] | 0.997 |
| trd_1187 | rph | trd_1187 | trd_0433 | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.921 |
| trd_1187 | tilS | trd_1187 | trd_0295 | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Putative bifunctional protein tilS/hprT; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.455 |
| trd_1187 | trd_1131 | trd_1187 | trd_1131 | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.965 |
| trd_1187 | trd_1185 | trd_1187 | trd_1185 | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. | 0.540 |
| trd_1187 | trd_1505 | trd_1187 | trd_1505 | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Processing protease; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family. | 0.528 |
| trd_1505 | trd_1187 | trd_1505 | trd_1187 | Processing protease; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family. | Putative hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.528 |