STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_1206[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (156 aa)    
Predicted Functional Partners:
trd_1208
Carbon monoxide dehydrogenase medium chain; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.
 
 0.995
trd_1207
Oxidoreductase, large chain; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.993
trd_1215
Carbon-monoxide dehydrogenase, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.993
trd_0579
Oxidoreductase, large chain; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.991
trd_1848
Carbon monoxide dehydrogenase large chain; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.991
trd_0577
Carbon monoxide dehydrogenase medium chain; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.
 
 0.990
trd_1847
Carbon monoxide dehydrogenase large chain; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.990
trd_1213
Conserved hypothetical protein.
 
  
 0.822
trd_1212
Putative xanthine dehydrogenase accessory factor subfamily, putative; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02625.
 
  
 0.789
trd_1205
Carbon-monoxide dehydrogenase; Identified by match to protein family HMM PF06240.
       0.643
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
Server load: low (26%) [HD]