STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_1458Probable 4-aminobutyrate aminotransferase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (425 aa)    
Predicted Functional Partners:
trd_1459
Putative carboxypeptidase G2; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.
  
 
 0.667
trd_1460
Protein of unknown function superfamily; Identified by match to protein family HMM PF01936.
       0.634
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.606
dapB-2
Dihydrodipicolinate reductase, N-terminus domain protein; Identified by match to protein family HMM PF01113.
       0.529
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
   
 0.515
trd_1457
Hypothetical protein; Identified by glimmer; putative.
       0.498
trd_1037
Soluble hydrogenase 42 kDa subunit; Identified by match to protein family HMM PF00266.
  
 
 0.489
trd_1462
Hypothetical protein; Identified by glimmer; putative.
       0.472
trd_1468
Aldehyde dehydrogenase (nadp) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF05893.
 
 
 0.414
trd_1572
Aldh; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
 
 
 0.414
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.