STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_1552Putative two component system histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730. (473 aa)    
Predicted Functional Partners:
trd_1551
Putative two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.968
trd_1669
Transcriptional regulatory protein degU; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08279.
 
 0.847
trd_1366
Transcriptional regulatory protein degU; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.843
trd_1816
Response regulator uvrY; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.
 
 0.843
trd_1185
Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.832
trd_1754
Putative two-component system response regulator; Identified by match to protein family HMM PF00196.
 
 
 0.828
trd_1559
c-di-GMP phosphodiesterase A; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
  
 0.570
trd_1813
Putative sensory box protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
  
 0.533
trd_0048
PAS domain S-box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
  
 0.484
trd_1553
HesB/YadR/YfhF; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
       0.424
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.