Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
trd_1140 | trd_1574 | Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026. | Putative monooxygenase; Identified by match to protein family HMM PF00296. | 0.485 |
trd_1573 | trd_1574 | Hypothetical protein; Identified by glimmer; putative. | Putative monooxygenase; Identified by match to protein family HMM PF00296. | 0.554 |
trd_1573 | trd_1575 | Hypothetical protein; Identified by glimmer; putative. | Putative lipoprotein. | 0.414 |
trd_1574 | trd_1140 | Putative monooxygenase; Identified by match to protein family HMM PF00296. | Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026. | 0.485 |
trd_1574 | trd_1573 | Putative monooxygenase; Identified by match to protein family HMM PF00296. | Hypothetical protein; Identified by glimmer; putative. | 0.554 |
trd_1574 | trd_1575 | Putative monooxygenase; Identified by match to protein family HMM PF00296. | Putative lipoprotein. | 0.559 |
trd_1575 | trd_1573 | Putative lipoprotein. | Hypothetical protein; Identified by glimmer; putative. | 0.414 |
trd_1575 | trd_1574 | Putative lipoprotein. | Putative monooxygenase; Identified by match to protein family HMM PF00296. | 0.559 |