trd_1908 protein (Thermomicrobium roseum) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

trd_1908

Putative membrane protein. (528 aa)

Predicted Functional Partners:

trd_0550

0.716

trd_1676

0.656

trd_1822

0.642

trd_0005

0.623

trd_1578

0.575

trd_1477

0.557

def

0.499

trd_1907

0.463

trd_1883

0.449

trd_1275

0.434

Your Current Organism:

Thermomicrobium roseum

NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
def	trd_1908	trd_1614	trd_1908	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Putative membrane protein.	0.499
trd_0005	trd_0550	trd_0005	trd_0550	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.759
trd_0005	trd_1477	trd_0005	trd_1477	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.566
trd_0005	trd_1578	trd_0005	trd_1578	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Conserved hypothetical protein.	0.483
trd_0005	trd_1676	trd_0005	trd_1676	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	0.672
trd_0005	trd_1822	trd_0005	trd_1822	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	N-acetylmuramoyl-L-alanine amidase domain protein; Identified by match to protein family HMM PF01510.	0.791
trd_0005	trd_1883	trd_0005	trd_1883	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative multidrug-efflux transporter; Identified by match to protein family HMM PF07690.	0.771
trd_0005	trd_1908	trd_0005	trd_1908	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Putative membrane protein.	0.623
trd_0550	trd_0005	trd_0550	trd_0005	Hypothetical protein; Identified by glimmer; putative.	Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.759
trd_0550	trd_1275	trd_0550	trd_1275	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.	0.603
trd_0550	trd_1477	trd_0550	trd_1477	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.447
trd_0550	trd_1578	trd_0550	trd_1578	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein.	0.670
trd_0550	trd_1676	trd_0550	trd_1676	Hypothetical protein; Identified by glimmer; putative.	Putative Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	0.765
trd_0550	trd_1822	trd_0550	trd_1822	Hypothetical protein; Identified by glimmer; putative.	N-acetylmuramoyl-L-alanine amidase domain protein; Identified by match to protein family HMM PF01510.	0.678
trd_0550	trd_1883	trd_0550	trd_1883	Hypothetical protein; Identified by glimmer; putative.	Putative multidrug-efflux transporter; Identified by match to protein family HMM PF07690.	0.740
trd_0550	trd_1908	trd_0550	trd_1908	Hypothetical protein; Identified by glimmer; putative.	Putative membrane protein.	0.716
trd_1275	trd_0550	trd_1275	trd_0550	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.603
trd_1275	trd_1477	trd_1275	trd_1477	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.481
trd_1275	trd_1676	trd_1275	trd_1676	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.	Putative Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	0.594
trd_1275	trd_1908	trd_1275	trd_1908	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.	Putative membrane protein.	0.434