STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_1950Maltose ABC transporter, permease; Identified by match to protein family HMM PF00528. (279 aa)    
Predicted Functional Partners:
trd_1954
Putative oligopeptide transport atp-binding abc transporter protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
    0.977
trd_1955
Oligopeptide transport ATP-binding protein appF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
    0.973
trd_1951
Oligopeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
    0.968
trd_1629
Oligopeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
    0.958
trd_1952
Bacterial extracellular solute-binding proteins, family 5; Identified by match to protein family HMM PF00496.
 
   0.889
trd_1630
Oligopeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
    0.887
trd_1254
Oligopeptide transport system permease protein appB; Identified by match to protein family HMM PF00528.
    0.812
trd_1672
Oligopeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
    0.808
trd_0395
Oligopeptide transport system permease protein oppB; Identified by match to protein family HMM PF00528.
 
    0.800
trd_1841
Putative transport system permease protein; Identified by match to protein family HMM PF00528.
 
    0.800
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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