STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_1968Putative penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912. (842 aa)    
Predicted Functional Partners:
trd_0058
Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
 
 
 
 0.850
trd_1927
Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.
 
 
 
 0.811
trd_1373
Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223; match to protein family HMM TIGR03423.
 
 
 
 0.780
trd_0835
PbpA; Identified by match to protein family HMM PF00905.
 
 
 
 0.745
ftsW
Cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.
  
 
 
 0.704
trd_1435
Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
  
 
 
 0.702
trd_1939
Lipoprotein precursor; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
  
   
 0.685
trd_1531
Probable soluble lytic murein transglycosylase precursor; Identified by match to protein family HMM PF00515; match to protein family HMM PF01464; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
   
 0.653
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.610
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.584
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.