Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CTN_0342Transcriptional regulator, RpiR family. (280 aa)    
Predicted Functional Partners:
CTN_0341
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      0.800
CTN_0345
Tripartite ATP-independent periplasmic transporter, DctQ component.
       0.786
CTN_0344
TRAP dicarboxylate transporter, DctM subunit precursor.
       0.778
CTN_0343
Oxidoreductase, short chain dehydrogenase/reductase family.
       0.771
CTN_0346
ABC transporter, periplasmic substrate-binding protein.
  
    0.663
CTN_0371
Transcriptional regulator, GntR family.
  
   
 0.466
CTN_0340
M4C-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
       0.458
CTN_0347
Putative uncharacterized protein.
       0.408
Your Current Organism:
Thermotoga neapolitana
NCBI taxonomy Id: 309803
Other names: T. neapolitana DSM 4359, Thermotoga neapolitana ATCC 49049, Thermotoga neapolitana DSM 4359, Thermotoga neapolitana JCM 10099, Thermotoga neapolitana NS-E
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