STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0019Membrane protein, putative; Identified by match to protein family HMM PF02687. (419 aa)    
Predicted Functional Partners:
lolD
Lipoprotein-releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 0.984
SRU_1516
Putative permease domain protein; Identified by match to protein family HMM PF02687.
  
  
 
0.925
SRU_2848
ATP-binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
 
 0.874
SRU_1331
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.870
SRU_1569
Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548.
 
 
 
 0.834
SRU_1601
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.682
SRU_1846
Outer membrane protein, putative; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
   
 0.667
SRU_0417
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.641
SRU_1262
Outer membrane protein, OMP85 family, putative; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
   
 0.638
SRU_0020
Phosphosulfolactate synthase; Identified by match to protein family HMM PF02679.
  
    0.593
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.