SRU_0089 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SRU_0089

Membrane bound his kinase A; Identified by match to protein family HMM PF02518. (569 aa)

Predicted Functional Partners:

ark-2

0.711

SRU_0365

0.707

SRU_2863

0.703

SRU_0270

0.694

SRU_0129

0.674

SRU_2715

0.653

ylnA

0.646

SRU_0472

0.637

SRU_0075

0.605

SRU_1259

0.600

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0075	SRU_0089	SRU_0075	SRU_0089	Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	0.605
SRU_0075	SRU_0129	SRU_0075	SRU_0129	Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.	Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.	0.634
SRU_0075	SRU_0365	SRU_0075	SRU_0365	Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.	Putative sugar transporter; Identified by match to protein family HMM PF07690.	0.477
SRU_0075	SRU_0472	SRU_0075	SRU_0472	Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.	Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.952
SRU_0075	ark-2	SRU_0075	SRU_0143	Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.	Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.919
SRU_0089	SRU_0075	SRU_0089	SRU_0075	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.605
SRU_0089	SRU_0129	SRU_0089	SRU_0129	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.	0.674
SRU_0089	SRU_0270	SRU_0089	SRU_0270	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Conserved hypothetical protein.	0.694
SRU_0089	SRU_0365	SRU_0089	SRU_0365	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Putative sugar transporter; Identified by match to protein family HMM PF07690.	0.707
SRU_0089	SRU_0472	SRU_0089	SRU_0472	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.637
SRU_0089	SRU_1259	SRU_0089	SRU_1259	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	D-lactate dehydrogenase, putative; Identified by match to protein family HMM PF07690.	0.600
SRU_0089	SRU_2715	SRU_0089	SRU_2715	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Succinylglutamate desuccinylase / Aspartoacylase family; Identified by match to protein family HMM PF04952.	0.653
SRU_0089	SRU_2863	SRU_0089	SRU_2863	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Conserved hypothetical protein.	0.703
SRU_0089	ark-2	SRU_0089	SRU_0143	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.711
SRU_0089	ylnA	SRU_0089	SRU_1657	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	Anion permease; Identified by match to protein family HMM PF01384.	0.646
SRU_0129	SRU_0075	SRU_0129	SRU_0075	Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.634
SRU_0129	SRU_0089	SRU_0129	SRU_0089	Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.	Membrane bound his kinase A; Identified by match to protein family HMM PF02518.	0.674
SRU_0129	SRU_0270	SRU_0129	SRU_0270	Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.	Conserved hypothetical protein.	0.734
SRU_0129	SRU_0365	SRU_0129	SRU_0365	Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.	Putative sugar transporter; Identified by match to protein family HMM PF07690.	0.728
SRU_0129	SRU_1259	SRU_0129	SRU_1259	Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.	D-lactate dehydrogenase, putative; Identified by match to protein family HMM PF07690.	0.476