STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0095Utilizing regulatory protein tutC; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1067 aa)    
Predicted Functional Partners:
SRU_0075
Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
0.978
SRU_2322
DNA-binding response regulator/sensor histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
0.976
drrA
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.951
drrA-2
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.951
SRU_1175
Alkaline phosphatase synthesis transcriptional regulatory proteinphoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.950
SRU_2492
PhoP3 response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.950
SRU_2830
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.949
drrA-5
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.947
drrA-4
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.938
SRU_0483
Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.
 
 
0.924
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.