STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0102Conserved hypothetical protein; Identified by match to protein family HMM PF04536. (276 aa)    
Predicted Functional Partners:
SRU_0101
lemA protein; Identified by match to protein family HMM PF04011.
 
    0.935
SRU_2098
Conserved hypothetical protein.
    
   0.813
SRU_1379
Domain of unknown function (DUF477) superfamily.
 
     0.801
coxB1
Cytochrome oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
   0.747
coxB2
Cytochrome c oxidase subunit II; Identified by similarity to GB:AAV46104.1; match to protein family HMM PF00116.
    
   0.746
coxA2
Cytochrome c oxidase subunit I; Identified by similarity to GB:AAV46105.1; match to protein family HMM PF00115.
    
   0.746
coxA1
Cytochrome oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.746
SRU_0103
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515.
     
 0.733
SRU_0324
Identified by match to protein family HMM PF00034.
    
   0.708
SRU_2104
Conserved hypothetical protein.
    
   0.708
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.