STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0103Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515. (150 aa)    
Predicted Functional Partners:
SRU_2191
Cytochrome c-type biogenesis protein CcmE, putative; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.749
SRU_0102
Conserved hypothetical protein; Identified by match to protein family HMM PF04536.
     
 0.733
SRU_0020
Phosphosulfolactate synthase; Identified by match to protein family HMM PF02679.
 
     0.722
SRU_2143
Cytochrome c biogenesis factor; Identified by match to protein family HMM PF01578.
  
     0.713
SRU_0104
LysM domain protein; Identified by match to protein family HMM PF01476.
   
   0.703
SRU_2189
Heme exporter protein C, putative; Identified by match to protein family HMM PF01578.
  
     0.696
SRU_1216
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.661
SRU_1534
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.655
SRU_1731
Histone H1-like protein.
  
     0.655
SRU_1028
Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
 
 0.620
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.