STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0112Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022. (148 aa)    
Predicted Functional Partners:
SRU_0111
Cadmium efflux ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
 
  
 0.777
SRU_1594
Cation-transporting ATPase pacS; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
  
 0.638
SRU_0108
ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.
       0.589
SRU_0109
ISSru3, transposase insB; Identified by match to protein family HMM PF03400.
       0.589
SRU_0110
Conserved hypothetical protein.
       0.589
SRU_0584
Transporter, sodium/sulfate symporter family; Identified by match to protein family HMM PF02080.
  
  
 0.468
SRU_2537
Transcriptional regulator, ArsR family, putative; Identified by match to protein family HMM PF01022.
  
     0.438
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.