STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0199Glycosyl transferase. (136 aa)    
Predicted Functional Partners:
SRU_0201
Putative colanic acid biosynthesis glycosyl transferase.
   
 0.940
SRU_0200
IS605 family transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.
       0.576
SRU_0202
Hypothetical protein; Identified by Glimmer2; putative.
       0.576
SRU_0203
Conserved hypothetical protein.
       0.564
SRU_0204
Protein of unknown function (DUF433) family; Identified by match to protein family HMM PF04255.
       0.564
SRU_0266
Putative glycosyl transferase N-acetylglucosaminyltransferase), RgpG; Identified by match to protein family HMM PF00953.
  
   
 0.457
vapC
PIN domain, putative; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.427
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.