STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0259Histidine kinase family; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (325 aa)    
Predicted Functional Partners:
SRU_0258
Alginate biosynthesis regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
   0.946
algR
Two-component system, regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
   0.845
SRU_0749
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
   0.845
SRU_2327
LytTr DNA-binding domain family; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
   0.845
SRU_2855
Two-component system response regulator protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
   0.845
SRU_2726
LytTr DNA-binding domain family; Identified by match to protein family HMM PF00072.
 
   0.844
SRU_0865
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
      0.460
SRU_0575
Phosphate regulon sensor protein phoR; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
      0.451
SRU_2487
Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
      0.414
SRU_2322
DNA-binding response regulator/sensor histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
    
 0.411
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.