Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SRU_0303 | umuD | SRU_0303 | SRU_0304 | Conserved hypothetical protein TIGR00266; Identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.414 |
| SRU_0305 | SRU_0306 | SRU_0305 | SRU_0306 | Protein umuC; Identified by match to protein family HMM PF00817. | Probable RNA-biniding protein; Identified by match to protein family HMM PF05670. | 0.472 |
| SRU_0305 | SRU_1441 | SRU_0305 | SRU_1441 | Protein umuC; Identified by match to protein family HMM PF00817. | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | 0.455 |
| SRU_0305 | lexA | SRU_0305 | SRU_1177 | Protein umuC; Identified by match to protein family HMM PF00817. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.463 |
| SRU_0305 | recA | SRU_0305 | SRU_1531 | Protein umuC; Identified by match to protein family HMM PF00817. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.661 |
| SRU_0305 | umuD | SRU_0305 | SRU_0304 | Protein umuC; Identified by match to protein family HMM PF00817. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.954 |
| SRU_0306 | SRU_0305 | SRU_0306 | SRU_0305 | Probable RNA-biniding protein; Identified by match to protein family HMM PF05670. | Protein umuC; Identified by match to protein family HMM PF00817. | 0.472 |
| SRU_0306 | umuD | SRU_0306 | SRU_0304 | Probable RNA-biniding protein; Identified by match to protein family HMM PF05670. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.452 |
| SRU_1441 | SRU_0305 | SRU_1441 | SRU_0305 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Protein umuC; Identified by match to protein family HMM PF00817. | 0.455 |
| SRU_1441 | SRU_2553 | SRU_1441 | SRU_2553 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Hypothetical protein; Identified by Glimmer2; putative. | 0.455 |
| SRU_1441 | dinB | SRU_1441 | SRU_1539 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.455 |
| SRU_1441 | lexA | SRU_1441 | SRU_1177 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.465 |
| SRU_1441 | recA | SRU_1441 | SRU_1531 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.483 |
| SRU_1441 | umuD | SRU_1441 | SRU_0304 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.465 |
| SRU_2553 | SRU_1441 | SRU_2553 | SRU_1441 | Hypothetical protein; Identified by Glimmer2; putative. | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | 0.455 |
| SRU_2553 | lexA | SRU_2553 | SRU_1177 | Hypothetical protein; Identified by Glimmer2; putative. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.463 |
| SRU_2553 | recA | SRU_2553 | SRU_1531 | Hypothetical protein; Identified by Glimmer2; putative. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.661 |
| SRU_2553 | umuD | SRU_2553 | SRU_0304 | Hypothetical protein; Identified by Glimmer2; putative. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.463 |
| dinB | SRU_1441 | SRU_1539 | SRU_1441 | Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | 0.455 |
| dinB | lexA | SRU_1539 | SRU_1177 | Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.463 |
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