STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0343ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (255 aa)    
Predicted Functional Partners:
SRU_0344
ABC transporter, permease; Identified by match to protein family HMM PF02405.
 0.996
SRU_2501
Domain of unknown function superfamily; Identified by match to protein family HMM PF02405.
 
 0.992
SRU_0342
Identified by match to protein family HMM PF02470.
 
 
 0.976
SRU_2503
Mce related protein; Identified by match to protein family HMM PF02470.
 
 0.957
SRU_2502
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 
0.911
SRU_0311
NosF protein; Identified by match to protein family HMM PF00005.
    
0.910
SRU_0147
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
    
0.905
SRU_0172
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
     
0.895
SRU_2750
Putative periplasmic efflux protein.
 
 
 0.893
SRU_2851
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
      0.875
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.