STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0344ABC transporter, permease; Identified by match to protein family HMM PF02405. (371 aa)    
Predicted Functional Partners:
SRU_0343
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.996
SRU_2502
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.992
SRU_2503
Mce related protein; Identified by match to protein family HMM PF02470.
 
 0.970
SRU_0342
Identified by match to protein family HMM PF02470.
 
 
 0.954
SRU_2501
Domain of unknown function superfamily; Identified by match to protein family HMM PF02405.
  
  
 
0.922
SRU_2750
Putative periplasmic efflux protein.
 
 
 0.886
SRU_1359
Anti-sigma B factor antagonist, putative; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377.
   
   0.766
SRU_1362
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
  0.622
SRU_0341
Protein of unknown function (DUF330) superfamily; Identified by match to protein family HMM PF03886.
 
     0.580
SRU_0927
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
     0.509
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.