STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirATonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782. (1015 aa)    
Predicted Functional Partners:
SRU_0439
Outer membrane lipoprotein, putative.
 
     0.759
SRU_0353
Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512.
       0.709
SRU_0354
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
       0.709
SRU_2540
Conserved hypothetical protein.
  
     0.638
SRU_0572
Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.
  
     0.597
susB
Alpha-glucosidase.
  
     0.520
SRU_1551
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.468
SRU_1192
TonB family C-terminal domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352.
 
 
   0.445
SRU_0130
GumN protein; Identified by match to protein family HMM PF07446.
  
     0.440
SRU_0537
Peptidase.
  
     0.421
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.