STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0353Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512. (362 aa)    
Predicted Functional Partners:
SRU_0354
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
 
     0.877
SRU_0836
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
  
     0.746
cirA
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
       0.709
SRU_1535
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.694
SRU_0854
Mutant NtrC-like activator; Identified by match to protein family HMM PF00072.
  
     0.622
SRU_2394
Sensor kinase protein rcsC; Identified by match to protein family HMM PF02518.
  
     0.616
SRU_2065
Two-component system sensor histidine kinase/response regulator, hybrid, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07495.
  
     0.615
SRU_1122
FixL-related histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
     0.580
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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