STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0358Outer membrane protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (1022 aa)    
Predicted Functional Partners:
SRU_0359
Outer membrane protein; Identified by match to protein family HMM PF07980.
     0.950
SRU_2842
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
 
   0.831
SRU_2181
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
 
 
   0.826
SRU_2177
Conserved hypothetical protein.
  
 
   0.813
SRU_0367
Conserved hypothetical protein.
  
 
   0.800
SRU_2860
Conserved hypothetical protein.
  
 
   0.789
SRU_0361
Putative alpha-amylase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.
 
     0.758
SRU_2409
Glycosyl hydrolase, family 13, putative; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family.
  
     0.743
SRU_2325
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.722
SRU_0081
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.705
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.