STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0366Putative outer membrane protein, probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (1028 aa)    
Predicted Functional Partners:
SRU_0367
Conserved hypothetical protein.
     0.961
SRU_2842
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
  
 
   0.808
SRU_2181
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
  
 
   0.806
SRU_2860
Conserved hypothetical protein.
     0.800
SRU_2177
Conserved hypothetical protein.
 
     0.781
SRU_2325
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.749
SRU_0359
Outer membrane protein; Identified by match to protein family HMM PF07980.
  
     0.748
chb
beta-N-acetylhexosaminidase; Identified by match to protein family HMM PF00728; match to protein family HMM PF03174.
 
     0.738
SRU_0029
Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.714
SRU_1327
Conserved hypothetical protein.
  
     0.707
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.