STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0413Phospholipase, patatin family; Identified by match to protein family HMM PF01734. (390 aa)    
Predicted Functional Partners:
FadE
Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
 
  
 0.564
yfcX
Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.551
SRU_0411
DoxX subfamily, putative; Identified by match to protein family HMM PF07681.
       0.494
SRU_2796
Conserved hypothetical protein.
  
     0.477
SRU_0014
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
     
 0.448
SRU_0943
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.424
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
Server load: low (30%) [HD]