STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0434Glycine betaine ABC transporter glycine betaine-binding protein, putative; Identified by match to protein family HMM PF04069. (339 aa)    
Predicted Functional Partners:
SRU_0432
Glycine betaine/L-proline transport system permease protein proW; Identified by match to protein family HMM PF00528.
 
 0.999
proV
Glycine betaine/L-proline transport ATP binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186.
 
 0.997
SRU_0433
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF04069.
 
  
 
0.945
SRU_2474
Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 
 
 0.747
SRU_0435
Conserved hypothetical protein.
 
     0.601
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.465
SRU_2398
iron(III) ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
    
 0.410
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.