STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0463Protein of unknown function superfamily; Identified by match to protein family HMM PF01904. (246 aa)    
Predicted Functional Partners:
SRU_0464
Putative ATPase; Identified by match to protein family HMM PF03969.
       0.634
mutM
formamidopyrimidine-DNA glycosylase; Identified by similarity to SP:O34403; match to protein family HMM PF01149; match to protein family HMM PF06831.
       0.612
cobB
Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.
      0.565
SRU_0461
Deoxycytidine triphosphate deaminase.
       0.423
SRU_1682
PHP domain protein; Identified by match to protein family HMM PF02811.
 
     0.421
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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