Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SRU_0273 | SRU_0537 | SRU_0273 | SRU_0537 | Phosphodiesterase/alkaline phosphatase D-like protein. | Peptidase. | 0.425 |
SRU_0536 | SRU_0537 | SRU_0536 | SRU_0537 | Identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670. | Peptidase. | 0.451 |
SRU_0537 | SRU_0273 | SRU_0537 | SRU_0273 | Peptidase. | Phosphodiesterase/alkaline phosphatase D-like protein. | 0.425 |
SRU_0537 | SRU_0536 | SRU_0537 | SRU_0536 | Peptidase. | Identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670. | 0.451 |
SRU_0537 | SRU_0538 | SRU_0537 | SRU_0538 | Peptidase. | ATP-dependent DNA helicase pcrA; Identified by match to protein family HMM PF00580. | 0.484 |
SRU_0537 | SRU_0565 | SRU_0537 | SRU_0565 | Peptidase. | Serine protease / subtilase peptidase; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family. | 0.466 |
SRU_0537 | SRU_1604 | SRU_0537 | SRU_1604 | Peptidase. | Identified by match to protein family HMM PF01433. | 0.436 |
SRU_0537 | SRU_1879 | SRU_0537 | SRU_1879 | Peptidase. | Hypothetical protein; Identified by Glimmer2; putative. | 0.455 |
SRU_0537 | SRU_2313 | SRU_0537 | SRU_2313 | Peptidase. | Ferric enterobactin receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.511 |
SRU_0537 | SRU_2679 | SRU_0537 | SRU_2679 | Peptidase. | Hypothetical protein; Identified by Glimmer2; putative. | 0.657 |
SRU_0537 | bfeA | SRU_0537 | SRU_2415 | Peptidase. | Ferric enterobactin receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.561 |
SRU_0537 | tal | SRU_0537 | SRU_0080 | Peptidase. | Putative Transaldolase Phosphoglucose isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family. | 0.461 |
SRU_0538 | SRU_0537 | SRU_0538 | SRU_0537 | ATP-dependent DNA helicase pcrA; Identified by match to protein family HMM PF00580. | Peptidase. | 0.484 |
SRU_0565 | SRU_0537 | SRU_0565 | SRU_0537 | Serine protease / subtilase peptidase; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family. | Peptidase. | 0.466 |
SRU_0565 | SRU_1879 | SRU_0565 | SRU_1879 | Serine protease / subtilase peptidase; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.596 |
SRU_0565 | SRU_2679 | SRU_0565 | SRU_2679 | Serine protease / subtilase peptidase; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.636 |
SRU_1604 | SRU_0537 | SRU_1604 | SRU_0537 | Identified by match to protein family HMM PF01433. | Peptidase. | 0.436 |
SRU_1604 | SRU_2679 | SRU_1604 | SRU_2679 | Identified by match to protein family HMM PF01433. | Hypothetical protein; Identified by Glimmer2; putative. | 0.417 |
SRU_1879 | SRU_0537 | SRU_1879 | SRU_0537 | Hypothetical protein; Identified by Glimmer2; putative. | Peptidase. | 0.455 |
SRU_1879 | SRU_0565 | SRU_1879 | SRU_0565 | Hypothetical protein; Identified by Glimmer2; putative. | Serine protease / subtilase peptidase; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family. | 0.596 |
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