STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0537Peptidase. (676 aa)    
Predicted Functional Partners:
SRU_2679
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.657
bfeA
Ferric enterobactin receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.561
SRU_2313
Ferric enterobactin receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.511
SRU_0538
ATP-dependent DNA helicase pcrA; Identified by match to protein family HMM PF00580.
       0.484
SRU_0565
Serine protease / subtilase peptidase; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family.
  
 
 0.466
tal
Putative Transaldolase Phosphoglucose isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
 
 0.461
SRU_1879
Hypothetical protein; Identified by Glimmer2; putative.
  
   0.455
SRU_0536
Identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670.
  
    0.451
SRU_1604
Identified by match to protein family HMM PF01433.
  
     0.436
SRU_0273
Phosphodiesterase/alkaline phosphatase D-like protein.
  
     0.425
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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