STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0565Serine protease / subtilase peptidase; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family. (564 aa)    
Predicted Functional Partners:
SRU_0566
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
SRU_2679
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.636
SRU_1375
Zn-dependent aminopeptidase, putative.
 
 
 0.635
SRU_1879
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.596
SRU_2181
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
  
   0.510
SRU_0410
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.505
SRU_0537
Peptidase.
  
 
 0.466
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.