STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0569Trehalose-6-phosphate synthase domain, putative; Identified by match to protein family HMM PF00982. (528 aa)    
Predicted Functional Partners:
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
 0.999
SRU_0847
Trehalose synthase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456.
  
 
 0.948
treZ
Malto-oligosyltrehalose trehalohydrolase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402.
  
 
 0.911
GlgC
ADP-glucose pyrophosphorylase; Identified by match to protein family HMM PF00483.
     
 0.856
SRU_0634
NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
     
  0.800
SRU_0387
Glycosyl hydrolase, family 15; Identified by match to protein family HMM PF00723.
 
   
 0.796
SRU_0570
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
glpQ
Glycerophosphoryl diester phosphodiesterase; Identified by match to protein family HMM PF03009.
       0.598
SRU_0572
Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.
       0.586
SRU_1698
Conserved hypothetical protein.
   
    0.503
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.